Bay City was an American city located in parts of San Francisco, California, on the Western Coastline.
Old Fort: The Old Fort was a fortress on the northwestern side of the Bay and housed a secret KBG base. The base was destroyed when Cryptosporidium-138 attacked it, searching for Coyote Bongwater.
Old Fort Tunnel: A tunnel cutting through a slope, west of the Old Fort.
Golden Gate Park: A park south of the Old Fort, where Hippies would gather in communes. The park had a stage and speakers for part of a Hippie Convention (part of the Revelade ordeal between the Furons and KGB), a small base west of it with tents, Revelade trucks, Hippie vans outfitted with machine guns, and KGB Agents (destroyed by Cryptosporidium after the Convention), and an Arkvoodle Cult camp. Unlike Hyde Park in Albion, England Golden Gate Park is dotted with tents set up by the Hippies.
Hashbury: A neighborhood south of Golden Gate Park, home to the "undesirable" citizens of Bay City: Hippies, drug addicts, thugs, and so on. Hashbury was Coyote Bongwater's Revelade distributing spot, and also has a fenced in Landing Zone and Record Store.
Ginsberg Heights: A neighborhood southeast of Hashbury, at the bottom of the "U" the Bay makes. The upper-class is more concentrated here, and the buildings are fancier. Ginsberg Heights has a lower section, west of Coit Mountain, and an upper section, west of Coit Tower but on the mountain.
Coit Tower: A monument built for the Bay City Fire Department, and a potential communications hub (the Furons used it as a transmission tower). Coit Tower is on the peak of Coit Mountain.
Coit Mountain: A high mountain that Coit Tower sits on. The road snakes around the mountain slopes, and is a high-traffic area for Urbans and Policemen.
Coit Tower Tunnel: A tunnel going through a slope near Coit Mountain.
The Eastern Lowlands: An unnamed neighborhood parallel to Hashbury.
The Wharf: A port north of the Eastern Lowlands. In the south there are two large building, two piers (one on the western side, one on the eastern), and to the north Wharf Mountain. The western pier has soldiers stationed there.
Wharf Mountain: A mountain parallel to Old Fort. It is abandoned, but once arms smuggling soldiers in the US Army set up a base there, with three redoubts blocking the path to the top of the mountain and a large fortified area on the top.
Alcatraz: Informally known as the Rock, Alcatraz is an abandoned prison that the KGB used as a base. Twice it was attacked by Cryptosporidium-138: once in a spy mission that resulted in a shootout and destruction of the compound, and the second time it was attacked because the KGB had rebuilt it and were using it as the base for the arms smuggling ring in Bay City.
Bay City Bay: A bay in Bay City that creates a donut shape, except without a coast to the north. Alcatraz is in the middle of the bay. The only way, other than the Saucer, to cross the bay is by going to the Wharf and flying by Jetpack to Alcatraz. The bay might be polluted by nuclear waste, as vans carrying nuclear bombs fell in the water.
The first battle in Bay City happened after Orthopox-13's Mothership was destroyed. KGB Agents ambushed Cryptosporidium-138 in Golden Gate Park and attacked him, skirmishing with them in till Cryptosporidium met up with HoloPox in Hashbury.
The second battle was between the Furons and KGB. Coyote Bongwater bought a fleet of around 15 blimps and filled them with Revelade, planning to fumigate Bay City with Revelade mist. Cryptosporidium destroyed every blimp in his saucer before the air was saturated.
Cryptosporidium, after destroying the blimps, learned from Prudence Kane that Bongwater was going to dump Revelade into the bay via trucks. He quickly destroyed the trucks while they were parked in the camp (behind the stage in Golden Gate Park). He continued by launching an assault on Old Fort, where he killed Bongwater and a group of KGB Agents.
After Bongwater was killed, Cryptosporidium sneaked into Alcatraz, where he learned that the KGB were going to use four nuclear time bombs, carried in vans, to destroy Bay City. He killed an agent carrying information on where the vans were, then dropped the vans in the water. Once the nuclear threat was neutralized, he destroyed Alcatraz.
Cryptosporidium did several jobs for Sergeant Fauxhall. One was returning a draft dodger to the Wharf, who was holed up on Coit Mountain. Around the mountain armed Hippies (so-called pacifists defending the dodger, Clayton Cartwell Jr.) fought it out with the Bay City Police. The Hippies were divided into groups of 4-6, armed with shotguns, and hat machine gun-armed vans. The second mission was a major battle: Cryptosporidium, supported by soldiers, had to kill a private (Private Danza) running an arms smuggling ring in the military. The soldiers had three redoubts along the path up Wharf Mountain (armed with bazookas and grenades, and supported by ground turrets), and at the summit a redoubt holding EMP Mines, Gun Turrets, traitor soldiers, and Private Danza. Cryptosporidium had an understocked armory, so this battle was a nightmare (Note: this is assuming the player did the Odd Job as soon as possible and on foot).
The Bay City Police, led by Officer Rudolph, launched a raid on an Arkvoodle Cult camp in Bay City. Cryptosporidium held them off, keeping the police from destroying every tent. Later Officer Rudolph hired Cryptosporidium to kill a Cultist who claimed the police as using excessive violence (which they did: the cult had not hurt anybody). The Cultists was being guarded by police. When he arrived at a hotel (guarded by the police) Crypto killed him.
The KGB turned out to be running the arms smuggling ring, and HoloPox had Cryptosporidium clear out Alcatraz to stop their plans again. There were dozens of KGB, scattered ground turrets, and EMP Mines making the mission dangerous. Crypto succeeded.